BioInformatics

Biological Databases & Computational Genomics

Notes


Week of	Topic	Instructor
Jan 8	Mathematical Induction and Recursive Definitions	Ouyang
Jan 15	Pairwise Alignment & Dynamic Programming	Ouyang
Jan 22	FASTA, BLAST, Gapped BLAST	Ouyang
Jan 29	PSI-BLAST, and Substitution Matrices	Golhar
Feb 5	Promoter Prediction (Footprinting Example)	Golhar
Feb 12	Multiple Sequence Alignment and Neighbor-Joining	Golhar
Feb 19	TBA	Golhar
Feb 26	Mid-Term
Mar 5	Hidden Markov Models	Ouyang
Mar 12	TBA	Ouyang
Mar 19	RNA Analysis and Part 2	Mirochnitchenko
Mar 26	Gene Prediction and Part 2 GPQ	Mirochnitchenko
Apr 2	Phylogenetic Analysis and PQ	Mirochnitchenko
Apr 9	Comparative Genomics Part I Part 2	Mirochnitchenko
Apr 16	Final Exam