Table of Contents

As students in GINF5001 proceed through this workshop, I recommend they also have open the assignment they have downloaded from WebCT.

• Introduction
  • Exercise 1 - Accessing EMBOSS-Explorer and wossname
    
    
• Working with Sequences
  • Exercise 2 - infoseq
    
    
• Pairwise Sequence Analysis - DotPlots
  • Exercise 3 - dottup
    
    
• Pairwise Sequence Analysis - Global Alignments
  • Exercise 4 - needle
    
    
• Pairwise Sequence Analysis - Local Alignments
  • Exercise 5 - water
    
    
• Protein Analysis - ORF
  • Exercise 6 - plotorf and getorf
    
    
• Protein Analysis - Translation
  • Exercise 7 - transseq
    
    
• Protein Analysis - Secondary Structure Prediction
  • Exercise 8 - pepinfo
    
    
• Patterns and Profiles
  • Exercise 9 - patmatmotifs and pscan
    
    
• Multiple Sequence Analysis
  • Exercise 10 - emma and prettyplot
    
    
• Conclusion

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Page last modified February 6, 2008